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| Status |
Public on Aug 02, 2022 |
| Title |
Gene count level transcriptomic data of high grade serous ovarian cancer |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Transcriptomic profiling was done on 81 primary tumours, 1 relapse tumour, 5 autopsy tumours (whole tissue sections or macrodissected to enrich for tumour), 29 ascites and 7 normal fallopian tube samples. 1 of the primary tumours is a low grade serous ovarian cancer sample.
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| Overall design |
Between 500 ng and 2 μg of total RNA (RNA integrity number >7, except for autopsy samples) was used for library preparation using the TruSeq RNA Sample Preparation v2 kit (Illumina) as per the manufacturer’s instructions using the Low-Throughput protocol. All libraries were sequenced as paired-end 100-bp on a HiSeq2000 instrument (Illumina).
**Raw data uploaded to European Genome-phenome Archive (EGA) repository under the accession code EGAD00001000877**
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| Contributor(s) |
Christie L, Garsed D, Pandey A, Bowtell D |
| Citation(s) |
36456881, 39025846 |
| |
| Submission date |
Jul 28, 2022 |
| Last update date |
Aug 09, 2024 |
| Contact name |
Dale W Garsed |
| E-mail(s) |
dale.garsed@petermac.org
|
| Organization name |
Peter MacCallum Cancer Centre
|
| Street address |
305 Grattan St
|
| City |
Melbourne |
| State/province |
VIC |
| ZIP/Postal code |
3000 |
| Country |
Australia |
| |
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| Platforms (1) |
| GPL11154 |
Illumina HiSeq 2000 (Homo sapiens) |
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| Samples (128)
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| Relations |
| BioProject |
PRJNA863245 |
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