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bobleesj/README.md

👉 Check scikit-package to save your time sharing scientific code in Python.

🕹️ Check quantem.widget to bring human interactivity to your algorithms and data.

My interests

I've been building and maintaining open-source scientific software for electron microscopy, machine learning descriptors, and molecular dynamics. Here are the projects I have been working on:

# Open-source project Description Publication Link
1 quantem.widget Bring human interactivity into data, compute, physics: 60 fps+ on multidimensional datasets M&M 2026 (abstract)
2 scikit-package Software packaging standards and tools for sharing reusable, maintainable scientific Python code Digital Discovery
3 CIF Bond Analyzer (CBA) Computes the minimum atomic bonding distances from sites, generating histograms. Journal of Alloys and Compounds
4 Structure Analyzer/Featurizer (SAF) Generates geometric features of interatomic distances, atomic environment information, and coordination numbers. Digital Discovery
5 Composition Analyzer/Featurizer (CAF) Generates chemical compositional features and provides tools for filtering, sorting, and merging data. Digital Discovery
6 cifkit Python package for .cif coordination geometry and atomic site analysis
7 Inorganic ML descriptors Thermoelectric materials performance (zT) predictions with ML ACS Applied Materials & Interfaces
8 Crystal structure clustering with SAF/CAF Unsupervised ML with ~80 features and experimental validation Journal of American Chemical Society (JACS)

Features implemented in CIF Bond Analyzer!

ternary

Last update: Aug 10, 2026

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  1. electronmicroscopy/quantem electronmicroscopy/quantem Public

    quantitative electron microscopy analysis toolkit

    Python 62 38

  2. scikit-package/scikit-package scikit-package/scikit-package Public

    scikit-package - software packaging standards and roadmap for sharing reproducible scientific software

    Python 16 20

  3. learn-swift-with-bob learn-swift-with-bob Public

    Learn Swift 4 with Bob: Intermediate to Advanced Swift 4 Course

    HTML 23 14

  4. javascript-cheatsheet javascript-cheatsheet Public

    Mastering Javascript OOP

    22 8

  5. Blog_Intro_to_CoreData Blog_Intro_to_CoreData Public

    Learn how to store, retrieve, delete data into disk using Core Data in Swift 3

    Swift 21 4

  6. Blog_Protocol_Oriented_View Blog_Protocol_Oriented_View Public

    Learn how to apply Protocol Oriented Programming to animate UIButton, UILabel, UIImageView and significant make code readable and concise

    Swift 19 3