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Open for collaborations!

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IdoBar/README.md

Hi there πŸ‘‹, welcome to my page!

About me

I'm Ido Bar, a senior research fellow (Crop and Pathogen Genomics) at Griffith University from 🏠 Brisbane, QLD, Australia.

I use bioinformatics, genomics and molecular biology tools to identify and solve production bottlenecks in non-model agriculture crops and aquaculture species (and related pathogens and microbes).

  • πŸ”­ I’m currently working on developing bioinformatics pipelines for genomic and transcriptomic analyses in a range of crops and organisms, see my Research Profile
  • 🌱 I’m learning how to use pangenomes and new ML methods in agricultural genomic research
  • πŸ‘― I’m happy to collaborate on anything bioinformatics-related
  • πŸ€” I’m looking for help with implementing AI in genomic research
  • πŸ’¬ Ask me about developing and documenting bioinformatics analysis pipelines (example), HPC computing, Nextflow, R
  • 🌊 Fun fact: I like to test my limits in whitewater kayaking and ocean kayak fishing

Tools and languages I code with

r logo   Rstudio logo   Markdown logo   Bash logo   Anaconda logo   Docker logo   Nextflow logo   latex logo   groovy logo   git logo   github logo

Programming Quote of the Day

Readme Quotes

🀝 Let's Collaborate!

I'm always open to interesting conversations and collaboration opportunities.
Feel free to reach out if you want to work together on something amazing! πŸš€

πŸ“« Message me on

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πŸ“Š Github Stats

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  1. Mazospega Mazospega Public

    MAke ZOtero SPEcies Great Again

    Python

  2. 6003ESC_workshops_binder 6003ESC_workshops_binder Public

    Scientific Data Analysis Workshops (Binder-ready)

    HTML

  3. A set of utilities to make easier R ... A set of utilities to make easier R working environment
    1
    # util.R:
    2
    # Utilities to make R a happier place
    3
    # Originally created by Brendan O'Connor, brenocon.com/code
    4
    # Edited by Ido Bar.
    5
    # Source the file directly from this gist using `devtools::source_gist("7f63547158ecdbacf31b54a58af0d1cc", filename = "util.R")`
  4. Crop_Production Crop_Production Public

    Crop production data for Australian Chickpea and tropical fruits (Papaya, Strawberry, Pineapple and Mango)

    HTML 2

  5. nf-taxblast nf-taxblast Public

    A Nextflow workflow for scalable distributed taxonomy-enabled NCBI Blast and Diamond homology searches

    Nextflow 1

  6. Assign_IF Assign_IF Public

    Search indexed scientific journals and find their impact factor

    HTML 1