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Revisiting drug-protein interaction prediction: a novel global-local perspective.

Zhou Z, Liao Q, Wei J, Zhuo L, Wu X, Fu X, Zou Q. Zhou Z, et al. Bioinformatics. 2024 May 2;40(5):btae271. doi: 10.1093/bioinformatics/btae271. Bioinformatics. 2024. PMID: 38648052 Free PMC article.

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Joint deep autoencoder and subgraph augmentation for inferring microbial responses to drugs.

Zhou Z, Zhuo L, Fu X, Zou Q. Zhou Z, et al. Brief Bioinform. 2023 Nov 22;25(1):bbad483. doi: 10.1093/bib/bbad483. Brief Bioinform. 2023. PMID: 38171927 Free PMC article.

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MHAM-NPI: Predicting ncRNA-protein interactions based on multi-head attention mechanism.

Zhou Z, Du Z, Wei J, Zhuo L, Pan S, Fu X, Lian X. Zhou Z, et al. Comput Biol Med. 2023 Sep;163:107143. doi: 10.1016/j.compbiomed.2023.107143. Epub 2023 Jun 14. Comput Biol Med. 2023. PMID: 37339574

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GCFMCL: predicting miRNA-drug sensitivity using graph collaborative filtering and multi-view contrastive learning.

Wei J, Zhuo L, Zhou Z, Lian X, Fu X, Yao X. Wei J, et al. Among authors: zhou z. Brief Bioinform. 2023 Jul 20;24(4):bbad247. doi: 10.1093/bib/bbad247. Brief Bioinform. 2023. PMID: 37427977

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Joint masking and self-supervised strategies for inferring small molecule-miRNA associations.

Zhou Z, Zhuo L, Fu X, Lv J, Zou Q, Qi R. Zhou Z, et al. Mol Ther Nucleic Acids. 2023 Dec 18;35(1):102103. doi: 10.1016/j.omtn.2023.102103. eCollection 2024 Mar 12. Mol Ther Nucleic Acids. 2023. PMID: 38261851 Free PMC article.

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Enhancing Herbal Medicine-Drug Interaction Prediction Using Large Language Models.

Yuan S, Zhou Z, Jin X, Zhuo L, Li K. Yuan S, et al. Among authors: zhou z. IEEE J Biomed Health Inform. 2025 Apr 7;PP. doi: 10.1109/JBHI.2025.3558667. Online ahead of print. IEEE J Biomed Health Inform. 2025. PMID: 40193268

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BloodPatrol: Revolutionizing Blood Cancer Diagnosis - Advanced Real-Time Detection Leveraging Deep Learning & Cloud Technologies.

Wei J, Wang L, Zhou Z, Zhuo L, Zeng X, Fu X, Zou Q, Li K, Zhou Z. Wei J, et al. Among authors: zhou z. IEEE J Biomed Health Inform. 2024 Nov 11;PP. doi: 10.1109/JBHI.2024.3496294. Online ahead of print. IEEE J Biomed Health Inform. 2024. PMID: 39527419

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AnomalGRN: deciphering single-cell gene regulation network with graph anomaly detection.

Zhou Z, Wei J, Liu M, Zhuo L, Fu X, Zou Q. Zhou Z, et al. BMC Biol. 2025 Mar 11;23(1):73. doi: 10.1186/s12915-025-02177-z. BMC Biol. 2025. PMID: 40069807 Free PMC article.

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GAM-MDR: probing miRNA-drug resistance using a graph autoencoder based on random path masking.

Zhou Z, Du Z, Jiang X, Zhuo L, Xu Y, Fu X, Liu M, Zou Q. Zhou Z, et al. Brief Funct Genomics. 2024 Jul 19;23(4):475-483. doi: 10.1093/bfgp/elae005. Brief Funct Genomics. 2024. PMID: 38391194

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An Effective Plant Small Secretory Peptide Recognition Model Based on Feature Correction Strategy.

Wang R, Zhou Z, Wu X, Jiang X, Zhuo L, Liu M, Li H, Fu X, Yao X. Wang R, et al. Among authors: zhou z. J Chem Inf Model. 2024 Apr 8;64(7):2798-2806. doi: 10.1021/acs.jcim.3c00868. Epub 2023 Aug 29. J Chem Inf Model. 2024. PMID: 37643082

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