Sequence Annotation

Latest research

1. Enhancing Semantic Clone Detection with Siamese Bi-LSTM for Multi-Level Source Code Representations

   • Fahmi Hassan Ali Quradaa
   • Sara Shahzad
   • Mohammed H. Al-Hakimi

   in Arabian Journal for Science and Engineering

   Article 29 September 2025

   

2. What does a language model know about proteins?

   • Jeffrey A. Ruffolo

   in Nature Methods

   Article 29 September 2025

   

3. Segmentation and Fuzzy Res-LeNet-Based Classification for Alzheimer's Disease Using Harmonic Fossa Optimization

   • R. Soujanya
   • Maganti Syamala
   • Sai Hanuman Akundi

   in Biomedical Materials & Devices

   Article 28 September 2025

   

4. Sequence similarity-based candidate gene prioritization for Type 1 diabetes mellitus using moment of inertia tensor

   • Eesam Vishnu
   • Nithya Chandramohan
   • P. Manimaran

   in Immunologic Research

   Article 28 September 2025

   

5. Dsrn-svmamba: a dual-stream recursive network base on SVMamba for scene text recognition

   • Yingnan Zhao
   • Fangqi Ding
   • Jielin Jiang

   in The Journal of Supercomputing

   Article 27 September 2025

   

6. A roadmap for equitable reuse of public microbiome data

   • Laura A. Hug
   • Roland Hatzenpichler
   • Alexander J. Probst

   in Nature Microbiology

   Article 26 September 2025

   

7. CLSeq and Nscp: novel methods for reducing hallucinations in text summarization for pre-trained models and LLMs

   • Ben Lu
   • Xianchuan Wang
   • Xianchao Wang

   in Journal of Big Data

   Article Open access 26 September 2025

   

8. Text Mining for Process–Structure–Properties Relationships in Metals

   • Amit K. Verma
   • Zhisong Zhang
   • Anthony D. Rollett

   in Integrating Materials and Manufacturing Innovation

   Article 26 September 2025

   

9. Silicodata: An Annotated Benchmark CXR Dataset for Silicosis Detection

   • Yasmeena Akhter
   • Rishabh Ranjan
   • Anurita Menon

   in Scientific Data

   Article Open access 26 September 2025

   

10. OrthoXML-Tools: A Toolkit for Manipulating OrthoXML Files for Orthology Data

    • Ali Yazdizadeh Kharrazi
    • Adrian M. Altenhoff
    • Sina Majidian

    in Journal of Molecular Evolution

    Article 26 September 2025

    

11. Complete genome sequence analysis of Sarbecovirus (severe acute respiratory syndrome-related coronaviruses) from Zimbabwean insectivorous bats

    • Vimbiso Chidoti
    • Anaïs Loisier
    • Florian Liégeois

    in BMC Genomics

    Article Open access 26 September 2025

    

12. Evaluation of cell type annotation reliability using a large language model-based identifier

    • Wenjin Ye
    • Yuanchen Ma
    • Weijun Huang

    in Communications Biology

    Article Open access 25 September 2025

    

13. Multimodal text guided network for chest CT pneumonia classification

    • Yujuan Feng
    • Guangyi Huang
    • Hao Cui

    in Scientific Reports

    Article Open access 25 September 2025

    

14. Development of immune gene-linked SSR markers for coconut scale insects (Aspidiotus destructor and Aspidiotus rigidus) toward comprehensive genetic analysis

    • Rochelle E. Alcasid-Quiñones
    • Ma. Anita M. Bautista
    • Barbara L. Caoili

    in International Journal of Tropical Insect Science

    Article 25 September 2025

    

15. The establishment of high-resolution sequence stratigraphy linked to INPEFA analysis in third member of Yanchang Formation, central Ordos Basin

    • Jiu-kuo Wang
    • Shi-qiang Xia
    • Xiao-liang Liu

    in Applied Geophysics

    Article 25 September 2025

16. TEtrimmer: a tool to automate the manual curation of transposable elements

    • Jiangzhao Qian
    • Hang Xue
    • Ralph Panstruga

    in Nature Communications

    Article Open access 25 September 2025

    

17. GPS Pipeline: portable, scalable genomic pipeline for Streptococcus pneumoniae surveillance from Global Pneumococcal Sequencing Project

    • Harry C. H. Hung
    • Narender Kumar
    • Stephanie W. Lo

    in Nature Communications

    Article Open access 24 September 2025

    

18. Integration of artificial neural network and move fault analysis model for predicting fault seals: a case study in “Swan” field, Niger Delta Basin

    • Oluwatoyin Abosede Oluwadare
    • Princess Hannah Ayefohanne

    in Arabian Journal of Geosciences

    Article 23 September 2025

    

19. Steering the LoCoMotif: Using domain knowledge in time series motif discovery

    • Aras Yurtman
    • Daan Van Wesenbeeck
    • Hendrik Blockeel

    in Data Mining and Knowledge Discovery

    Article 22 September 2025

    

20. Effect of a Comparative Analysis of Different Annotations of the Oryza sativa Rice Genome for In Silico Verification of Predicted Promoter Sequences

    • A. N. Bubnova
    • I. V. Yakovleva
    • A. M. Kamionskaya

    in Doklady Biochemistry and Biophysics

    Article 21 September 2025

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