Biological Databases

Latest research

1. BIRDBASE: A Global Dataset of Avian Biogeography, Conservation, Ecology and Life History Traits

   • Çağan H. Şekercioğlu
   • Kyle D. Kittelberger
   • Montague H. C. Neate-Clegg

   in Scientific Data

   Article Open access 30 September 2025

   

2. Metabarcoding markers and a reference database for neotropical mammals

   • Barbara R. N. Chaves
   • Jose Eustaquio Santos-Junior
   • Fabricio R. Santos

   in Conservation Genetics Resources

   Article 27 September 2025

   

3. Bulk Ingestion of Congressional Actions and Materials Dataset

   • Ryan Delano
   • Aaron Rudkin
   • In Song Kim

   in Scientific Data

   Article Open access 26 September 2025

   

4. A roadmap for equitable reuse of public microbiome data

   • Laura A. Hug
   • Roland Hatzenpichler
   • Alexander J. Probst

   in Nature Microbiology

   Article 26 September 2025

   

5. From toxicogenomics data to cumulative assessment groups: a framework for chemical grouping

   • Sebastian Canzler
   • Julienne Lehmann
   • Jörg Hackermüller

   in Archives of Toxicology

   Article Open access 26 September 2025

   

6. Research opportunities in precision oncology: perspectives on biospecimen and genomic data sharing from adults with cancer in Ireland

   • Shane O’Grady
   • Jessica C. Ralston
   • Walter Kolch

   in Irish Journal of Medical Science (1971 -)

   Article Open access 26 September 2025

   

7. Genomic typing, antimicrobial resistance gene, virulence factor and plasmid replicon database for the important pathogenic bacteria Staphylococcus aureus

   • Andrey Shelenkov
   • Anna Slavokhotova
   • Vasiliy Akimkin

   in BMC Genomic Data

   Article Open access 26 September 2025

   

8. Silicodata: An Annotated Benchmark CXR Dataset for Silicosis Detection

   • Yasmeena Akhter
   • Rishabh Ranjan
   • Anurita Menon

   in Scientific Data

   Article Open access 26 September 2025

   

9. Electronic data sources for drug utilization research and healthcare decision-making in Mexico

   • Yared Santa-Ana-Tellez
   • Anahí Dreser Mansilla
   • Luciane Cruz Lopes

   in BMC Health Services Research

   Article Open access 26 September 2025

   

10. Facilitating analysis and dissemination of proteomics data through metadata integration in MaxQuant

    • Walter Viegener
    • Shamil Urazbakhtin
    • Jinqiu Xiao

    in Nature Communications

    Article Open access 25 September 2025

    

11. CGMacros: a pilot scientific dataset for personalized nutrition and diet monitoring

    • Anurag Das
    • David Kerr
    • Bobak J. Mortazavi

    in Scientific Data

    Article Open access 25 September 2025

    

12. NCBI Orthologs: Public Resource and Scalable Method for Computing High-Precision Orthologs Across Eukaryotic Genomes

    • Dong-Ha Oh
    • Alexander Astashyn
    • Vamsi K. Kodali

    in Journal of Molecular Evolution

    Article Open access 25 September 2025

    

13. AI-driven knowledge-data graph for tracking global arbovirus research

    • Zhaoyan Ming
    • Ying Huang
    • Han Xia

    in Journal of Big Data

    Article Open access 24 September 2025

    

14. Fake publications in biomedical science: red-flagging method indicates mass production

    • Bernhard A. Sabel
    • Emely Knaack
    • Mirela-Ioana Bilc

    in Naunyn-Schmiedeberg's Archives of Pharmacology

    Article Open access 24 September 2025

    

15. Navigating Through the Noise: A Roadmap for Combining Interdisciplinary High Dimensional Data in Biological Systems

    • Matthew K. Brachmann
    • Craig T. Jacobs

    in Evolutionary Biology

    Article Open access 23 September 2025

    

16. The meaning behind the moniker: how to choose a science-company name that delights

    • Jacqui Thornton

    in Nature

    Article 23 September 2025

    

17. A standardized framework for circulating blood proteomics

    • Xue Cai
    • Philipp E. Geyer
    • Tiannan Guo

    in Nature Genetics

    Article 23 September 2025

    

18. DGK Herztage 2025

    in Clinical Research in Cardiology

    Article 22 September 2025

19. A Localized GTEx Database and Its Potential Applications in Biomedical Research

    • G. A. Churakov
    • M. D. Belyakov
    • S. V. Orlov

    in Molecular Biology

    Article 22 September 2025

    

20. ORMCKB: A Knowledge Database for Personalized Medicine in Deciphering the Oral Microbiome-Disease Axis

    • Yutao Wu
    • Yi Zhou
    • Weidong Tian

    in Interdisciplinary Sciences: Computational Life Sciences

    Article 17 September 2025

    

Related journals

• 

  Journal

  BMC Bioinformatics

  BMC Bioinformaticsis an open access, peer-reviewed journal that considers articles describing novel computational algorithms and software, models...

  Publishing model

  Open Access

  Journal Impact Factor

  3.3 (2024)

  Downloads

  7,556,602 (2024)

  Submission to first decision(median)

  5 days

• 

  Journal

  Journal of Biomedical Semantics

  Journal of Biomedical Semanticsaddresses issues of semantic enrichment and semantic processing in the biomedical and clinical domain. The scope of...

  Publishing model

  Open Access

  Journal Impact Factor

  2.0 (2024)

  Downloads

  347,769 (2024)

  Submission to first decision(median)

  12 days

• 

  Journal

  Scientific Data

  Scientific Datais an open access journal dedicated to data, publishing descriptions of research datasets and articles on research data sharing from...

  Publishing model

  Open Access

  Journal Impact Factor

  6.9 (2024)

  Downloads

  10,651,520 (2024)

  Submission to first decision(median)

  4 days