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Showing 1-20 of 216 results
  1. Article
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    YModPred: an interpretable prediction method for multi-type RNA modification sites in S. cerevisiae based on deep learning

    Background

    RNA post-transcriptional modifications involve the addition of chemical groups to RNA molecules or alterations to their local structure....

    Chunyan Ao, Mengting Niu, ... Yansu Wang in BMC Biology
    29 August 2025 Open access
  2. Article

    Integrated High-gain Feedback Control and Deep Reinforcement Learning Control of a Flexible Link With End-effector

    Precision trajectory tracking control of flexible link(FL) presents significant challenges stemming from the inherent non-minimum phase...

    22 August 2025
  3. Article
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    Integration of pre-trained protein language models with equivariant graph neural networks for peptide toxicity prediction

    Background

    Peptide-based therapeutics have great potential due to their versatility, high specificity, and suitability for a variety of therapeutic...

    Shihu Jiao, Xiucai Ye, ... Chao Zhan in BMC Biology
    28 July 2025 Open access
  4. Article
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    DTI-RME: a robust and multi-kernel ensemble approach for drug-target interaction prediction

    Background

    Drug-target interaction (DTI) refers to the specific mechanisms by which drug molecules interact with biological targets within a...

    Yuqing Qian, Xin Zhang, ... Xiaoyi Guo in BMC Biology
    28 July 2025 Open access
  5. Article

    Chronic Anatabine Administration Attenuates Cardiovascular Activity by Targeting NF-κB/NLRP3/Caspase-1-Dependent Pyroptosis and Oxidative Stress in Paraventricular Nucleus of Hypertensive Rat

    Hypertension is characterized by chronic inflammation. Anatabine, a natural alkaloid with anti-inflammatory properties, has demonstrated potential in...

    Qing Su, Shao-Jun Li, ... Meng-Lu Xu in Cardiovascular Toxicology
    21 July 2025
  6. Article
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    Deciphering cancer therapy resistance via patient-level single-cell transcriptomics with CellResDB

    Cancer therapy resistance remains a major challenge, with limited resources available for systematically studying its underlying mechanisms at the...

    Tianyuan Liu, Huiyuan Qiao, ... Yang Zhang in Communications Biology
    15 July 2025 Open access
  7. Article

    ViruSeg: Harnessing the Power of Large Language-Image Model for Enhanced Virus Image Segmentation

    Abstract

    The emergence of novel viral diseases, with SARS-CoV-2 as a stark example, poses increasing threats to public health, causing significant...

    Shengxiang Wang, Xiangzheng Fu, ... Quan Zou in Interdisciplinary Sciences: Computational Life Sciences
    27 June 2025
  8. Article
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    Interpretable multi-instance heterogeneous graph network learning modelling CircRNA-drug sensitivity association prediction

    Background

    Different expression levels of circular RNAs (circRNAs) affect the sensitivity of human cells to drugs, thus producing different responses...

    Mengting Niu, Chunyu Wang, ... Ximei Luo in BMC Biology
    14 May 2025 Open access
  9. Article
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    A self-conformation-aware pre-training framework for molecular property prediction with substructure interpretability

    The major challenges in drug development stem from frequent structure-activity cliffs and unknown drug properties, which are expensive and...

    Jianbo Qiao, Junru Jin, ... Leyi Wei in Nature Communications
    12 May 2025 Open access
  10. Article
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    Predicting rare drug-drug interaction events with dual-granular structure-adaptive and pair variational representation

    Adverse drug-drug interaction events (DDIEs) pose serious risks to patient safety, yet rare but severe interactions remain challenging to identify...

    Zhonghao Ren, Xiangxiang Zeng, ... Chen Lin in Nature Communications
    29 April 2025 Open access
  11. Article
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    metaTP: a meta-transcriptome data analysis pipeline with integrated automated workflows

    Background

    The accessibility of sequencing technologies has enabled meta-transcriptomic studies to provide a deeper understanding of microbial ecology...

    Limuxuan He, Quan Zou, Yansu Wang in BMC Bioinformatics
    26 April 2025 Open access
  12. Article
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    DGCLCMI: a deep graph collaboration learning method to predict circRNA-miRNA interactions

    Background

    Numerous studies have shown that circRNA can act as a miRNA sponge, competitively binding to miRNAs, thereby regulating gene expression and...

    Chao Cao, Mengli Li, ... Wu Han in BMC Biology
    23 April 2025 Open access
  13. Article
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    AnomalGRN: deciphering single-cell gene regulation network with graph anomaly detection

    Background

    Single-cell RNA sequencing (scRNA-seq) is now essential for cellular-level gene expression studies and deciphering complex gene regulatory...

    Zhecheng Zhou, Jinhang Wei, ... Quan Zou in BMC Biology
    11 March 2025 Open access
  14. Article
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    A same day α-synuclein RT-QuIC seed amplification assay for synucleinopathy biospecimens

    Parkinson’s disease (PD), dementia with Lewy bodies (DLB), and other synucleinopathies are characterized by the accumulation of abnormal,...

    Sabiha Parveen, Parvez Alam, ... Byron Caughey in npj Biosensing
    11 February 2025 Open access
  15. Article
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    RBD-displaying OMV nanovaccine boosts immunity against SARS-CoV-2

    Background

    Since the emergence of SARS-CoV-2, the causative agent of COVID-19, the global health landscape has confronted an unprecedented and...

    Rang Feng, Ruo-Yi Xue, ... Hai-Bo Li in Journal of Nanobiotechnology
    08 February 2025 Open access
  16. Article
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    Application of Artificial Intelligence In Drug-target Interactions Prediction: A Review

    Predicting drug-target interactions (DTI) is a complex task. With the introduction of artificial intelligence (AI) methods such as machine learning...

    Qian Liao, Yu Zhang, ... Ke Han in npj Biomedical Innovations
    13 January 2025 Open access
  17. Conference paper

    Control Law Design of Variable Stability Aircraft for Intelligent Aerial Combat Effectiveness Evaluation Tests

    The traditional evaluation system based on indicators is no longer suitable for the future assessment of intelligent aerial combat systems. To...
    2025
  18. Conference paper

    Closed-Loop Identification and Flight Test Verification of Small UAVs Based on Multi-model

    In response to the challenge of identifying the aircraft body model in closed-loop flight tests, this paper proposes a method based on multi-model...
    Shao Zhu, Zou Quan, Pang Zhekai in Advances in Guidance, Navigation and Control
    2025
  19. Conference paper

    Probe-Drogue Simulation Study of Autonomous Aerial Refueling Based on Prediction Model

    The movement characteristics of hose-drogue have significant influence on the success rate of Autonomous Aerial Refueling (AAR). The paper starts...
    Shao Zhu, Zou Quan, Pang Zhekai in Advances in Guidance, Navigation and Control
    2025
  20. Protocol

    Recent Advances in Computational Prediction of Secondary and Supersecondary Structures from Protein Sequences

    The secondary structures (SSs) and supersecondary structures (SSSs) underlie the three-dimensional structure of proteins. Prediction of the SSs and...
    Jian Zhang, Jingjing Qian, ... Lukasz Kurgan in Protein Supersecondary Structures
    2025
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