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Showing 1-20 of 42 results
  1. Article
    Full access

    Segmentation aware probabilistic phenotyping of single-cell spatial protein expression data

    Spatial protein expression technologies can map cellular content and organization by simultaneously quantifying the expression of >40 proteins at...

    Yuju Lee, Edward L. Y. Chen, ... Kieran R. Campbell in Nature Communications
    04 January 2025 Open access
  2. Chapter

    T Cell Development: From T-Lineage Specification to Intrathymic Maturation

    T cell development occurs in the thymus in both miceMouse and humans. Upon entry into the thymus, bone marrowBone marrow-derived blood-borne...
    Mahdieh Golzari-Sorkheh, Kogulan Yoganathan, ... Juan Carlos Zúñiga-Pflücker in Thymus Transcriptome and Cell Biology
    2025
  3. Article
    Full access

    Single-cell atlas of the human brain vasculature across development, adulthood and disease

    A broad range of brain pathologies critically relies on the vasculature, and cerebrovascular disease is a leading cause of death worldwide. However,...

    Thomas Wälchli, Moheb Ghobrial, ... Ivan Radovanovic in Nature
    10 July 2024 Open access
  4. Article
    Full access

    In vivo CRISPR screens reveal Serpinb9 and Adam2 as regulators of immune therapy response in lung cancer

    How the genetic landscape governs a tumor’s response to immunotherapy remains poorly understood. To assess the immune-modulatory capabilities of 573...

    Dzana Dervovic, Ahmad A. Malik, ... Daniel Schramek in Nature Communications
    31 May 2023 Open access
  5. Article
    Full access

    Publisher Correction: A systems approach identifies HIPK2 as a key regulator of kidney fibrosis

    Yuanmeng Jin, Krishna Ratnam, ... John Cijiang He in Nature Medicine
    20 July 2021
  6. Article

    RBPJ-dependent Notch signaling initiates the T cell program in a subset of thymus-seeding progenitors

    T cell specification and commitment require Notch signaling. Although the requirement for Notch signaling during intrathymic T cell development is...

    Edward L. Y. Chen, Patrycja K. Thompson, Juan Carlos Zúñiga-Pflücker in Nature Immunology
    21 October 2019
  7. Chapter

    T-Cell Development: From T-Lineage Specification to Intrathymic Maturation

    T-cell development occurs in the thymus in both mice and humans. Upon entry into the thymus, bone marrow-derived blood-borne progenitors receive...
    Kogulan Yoganathan, Edward L. Y. Chen, ... Juan Carlos Zúñiga-Pflücker in Thymus Transcriptome and Cell Biology
    2019
  8. Article
    Full access

    HEB is required for the specification of fetal IL-17-producing γδ T cells

    IL-17-producing γδ T (γδT17) cells are critical components of the innate immune system. However, the gene networks that control their development are...

    Tracy S. H. In, Ashton Trotman-Grant, ... Michele K. Anderson in Nature Communications
    08 December 2017 Open access
  9. Article
    Full access

    NetworkPainter: dynamic intracellular pathway animation in Cytobank

    Background

    High-throughput technologies such as flow and mass cytometry have the potential to illuminate cellular networks. However, analyzing the...

    Jonathan R Karr, Harendra Guturu, ... Markus W Covert in BMC Bioinformatics
    25 May 2015 Open access
  10. Article
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    The characteristic direction: a geometrical approach to identify differentially expressed genes

    Background

    Identifying differentially expressed genes (DEG) is a fundamental step in studies that perform genome wide expression profiling. Typically,...

    Neil R Clark, Kevin S Hu, ... Avi Ma’ayan in BMC Bioinformatics
    21 March 2014 Open access
  11. Article

    Kinetics of Sub-Micron Grain Size Refinement in 9310 Steel

    Recent efforts have focused on the development of novel manufacturing processes capable of producing microstructures dominated by sub-micron grains....

    Thomas Kozmel, Edward Y. Chen, ... Sammy Tin in Metallurgical and Materials Transactions A
    13 February 2014
  12. Article
    Full access

    Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool

    Background

    System-wide profiling of genes and proteins in mammalian cells produce lists of differentially expressed genes/proteins that need to be...

    Edward Y Chen, Christopher M Tan, ... Avi Ma’ayan in BMC Bioinformatics
    15 April 2013 Open access
  13. Conference paper

    ChEA2: Gene-Set Libraries from ChIP-X Experiments to Decode the Transcription Regulome

    ChIP-seq experiments provide a plethora of data regarding transcription regulation in mammalian cells. Integrating ChIP-seq studies into a computable...
    Yan Kou, Edward Y. Chen, ... Avi Ma‘ayan in Availability, Reliability, and Security in Information Systems and HCI
    2013
  14. Article

    Deformation Characteristics and Recrystallization Response of a 9310 Steel Alloy

    The flow behavior and recrystallization response of a 9310 steel alloy deformed in the ferrite temperature range were studied in this work. Samples...

    David Snyder, Edward Y. Chen, ... Sammy Tin in Metallurgical and Materials Transactions A
    18 September 2012
  15. Article

    A systems approach identifies HIPK2 as a key regulator of kidney fibrosis

    Kidney fibrosis is a common process that leads to the progression of various types of kidney disease. We used an integrated computational and...

    Yuanmeng Jin, Krishna Ratnam, ... John Cijiang He in Nature Medicine
    11 March 2012
  16. Article

    Mechanical Properties of Cast Ti-6Al-4V Lattice Block Structures

    Ti-6Al-4V lattice block structure panels were fabricated using an aerospace-quality investment casting process. Testing in compression, bending, and...

    Qizhen Li, Edward Y. Chen, ... David C. Dunand in Metallurgical and Materials Transactions A
    10 January 2008
  17. Article

    Transformation Superplasticity of Cast Titanium and Ti-6Al-4V

    Samples of unalloyed titanium and Ti-6Al-4V with a cast, coarse-grain structure were subjected to simultaneous mechanical loading and thermal cycling...

    Qizhen Li, Edward Y. Chen, ... David C. Dunand in Metallurgical and Materials Transactions A
    20 January 2007
  18. Article

    Competition Policy under Laissez-Faireism: Market Power and its Treatment in Hong Kong

    The paper describes the current competition policy framework in Hong Kong: how it came into existence, what business practices are prohibited, and...

    Edward K. Y. Chen, Ping Lin in Review of Industrial Organization
    01 September 2002
  19. Chapter

    China—EC Economic Relations: Experience and Prospects

    This paper attempts to analyse the economic relations between China and the EC since the opening up of China in 1977 in terms of China’s foreign...
    1997
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